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InBase 2.0

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Inteins

User and Intein Statistics

User and Intein Statistics show the number of sequences by submitted user and by HINT Class.

Citation Statistics

Citation Statistics show the number of citations of InBase 2.0 sequences. Click "Update" to show the chart. "Number of sequences" is the selection for the number of sequences that are listed in the chart. "Sort order" can be used to find sequences that are frequently/low cited. "Listing Amount" is for bar chart use only. It lists the selected number of bars on one row. "Name" can be used to search sequences with specific name.

Organism Statistics

Organism Statistics show the number of sequences linked to specific organism. Click "Update" to show the chart. "Grouping using entire name" can be selected to take in count also the straing information, if it is not selected only species name is used to group the sequences. Number in "Number of organisms" is used for the number of specific organism names used in visualization. "Sort order" is used to sort the results by names. "Sequence count sort order" is for sorting by the count of sequence of each organism. "Name contains (old names are included to search)" can be used to search for specific species or genus. "Listing Amount" is for bar chart use only. It lists the selected number of bars on one row.

Domain of Life

Chart contains the amount information of sequences of each domain of life (eubacteria, archaea, eucarya). Subclassification is performed using names of species.

Chart types

Bar or Pie charts can be used as visualization method. Use checkbox with title "Use bar charts" to select visualization method.
Help

Use bar charts:

Sequences classified by HINT Classes (one could be included in several HINT Classes)

Submissions to Database by user(s)

Homing endonucleases